I am a Christian from Kerala. A widespread image is spread by vested interests globally that Christian organisations are targted in India under the BJP government of Narendra Modi. Let me tell you one thing; unlike Muslims and Christians, for majority of the Hindus, religion is more cultural. They are not the ones who are 24/7 obsessed with their religion and when they meet someone, they are never bothered what religion the other person belongs.
Charity organisations in India were abusing their special status and were colluding with politicians of all dispensations and they could scam gullible devotees and create financial empires without any income tax or regulatory hurdles. Politicians corrupt money also used to be routed through these outfits (round-tripping of unaccounted or ill-gotten wealth).
Modi did bring in stricter norms for these charties and greater accountability for the money which is being raised abroad. While it could have made life difficult for many of these dubious people (like K P Yohannan), its possible that some genuine work also could have got affected due to fund flow being affected.
But just not that it is not just the Christian evangelists who are facing the heat. Many Hindu babas, dubious gurus, Godmen are all in trouble. A case in point is Swami Nityananda who had to escape the country. Another leading Hindu Godman Asaram is in jail on rape charges. Many godmen are in fact in jail of late.
While many Christian entities would be facing the heat, it cannot be denied that they were misusing their special status. Dont forget the fact that the “fringe” is much bigger among Christians (fanatic 24/7 obsession with their specific religion and being judgemental towards everyone else including other Christian groups) and Muslims (violent obsession with their religion and religious book). The “fringe” among Hindus is a reaction to the “fringe” among Christians and Muslims but I would say it still will be a very negligible minority but the fringe is always more vocal and makes more noise!!

Excerpts from Psalm 37: “Do not fret when wicked men seem to succeed. Do not envy evildoers. For they will quickly dry up like grass,
and wither away like plants.” “Wait patiently for the Lord! Wait confidently for him! Do not fret over the apparent success of a sinner, a man who carries out wicked schemes. Do not be angry and frustrated. Do not fret. That only leads to trouble. Wicked men will be wiped out, but those who rely on the Lord are the ones who will possess the land. Evil men will soon disappear; you will stare at the spot where they once were, but they will be gone.” This day is coming much sooner than KP thinks…